Monday, January 29, 2007

Extended deadline - CfP (IEEE CBMS-07) Grids for Biomedicine and Bioinformatics Special Tracks

Grids for Biomedicine and Bioinformatics

CALL FOR PAPERS

Biomedicine and Bioinformatics are quickly evolving into a research field that encompasses the use of all kinds of biomedical information, from genetic and proteomic data to image data associated with particular patients in clinical settings.
Biomedical Informatics comprises the fields of Bioinformatics (e.g., genomics and proteomics) and Medical Informatics (e.g., medical image analysis), and deals with issues related to the access to information technology in medicine, the analysis of genomics data, security, interoperability and integration of data-intensive biomedical applications.

Main issues in this field are:

  • Integration of multiple laboratories that collect large amounts of biomedical data (genomics, post-genomics, biomedical images and signals), so that researchers can:
    • continue to maintain their own biomedical and computing resources autonomously;
    • face effectively the growth of data they need to manage and process, exploiting recent methods such as data mining, taking into account that biomedical data are produced and stored continuously; and
    • integrate and share data and findings in a controlled manner.
  • Provision of large computing power such that researchers have access to
    • high performance distributed computational resouces for computationally demanding data analysis, e.g., medical image processing and simulation of medical treatment or surgery;
    • large storage capacity and distributed databases for the efficient retrieval, annotation and archiving of biomedical data.

What is missing today is:


  • the full integration of methods and technologies to enhance all phases of biomedical informatics and health care, including research, diagnosis, prognosis, etc.;
  • the dissemination of such methods in the clinical practice, whenever they are developed, deployed and maintained.
  • The grid paradigm offers CPU and data handling capabilities and allows users and laboratories to share their facilities (computing and data storage resources, instruments, knowledge, etc.) through high bandwidth networks between dynamically formed Virtual Organizations.
    Grid middleware currently offers basic services for Grid management, and application development and deployment. To face the complexity of novel, cooperative, distributed Health and Bioinformatics applications, new specialized Grid services have to be developed: in such a way Grids can be deployed to address the needs of the biomedical community.
    The goal of this Conference Track is to discuss well-known and emerging biomedical data-intensive systems in the context of Grids and to analyse technologies and methodologies useful to develop such systems in these environments. In particular, this track aims at offering a high level forum for exchanging information, ideas, techniques and software on how to progress in this rapidly evolving field, in order to support the advance in scientific research education as well as industrial applications.

    TOPICS OF INTEREST include, but are not limited to:

    • Grid Infrastructures for Biomedical Data Analysis and Management
    • Problem Solving Environments for Biomedical and Bioinformatics Applications
    • GRID based application in life science
    • Workflow application for complex analysis processes
    • High Throughput for in-silico virtual screening
    • Grid Computing Infrastructures, Middleware and Tools for Healthcare
    • Grid Computing Biomedical Services
    • Collaboration Technologies
    • Databases and the Grid in the Biomedical Field
    • Extracting Knowledge from Biomedical Data Grids
    • Data Grids for Bioinformatics
    • Grid Architectures for Interactive Biomedical Applications
    • Grid Architectures and Solutions for Data-Intensive Biomedical Applications
    • Grid-based Biomedical Informatics Interoperability
    • Security in Biomedical Data Grids
    • Semantic Grids for Multimedia Biomedical Data
    • Ubiquitous Access to Grid-enabled Applications in Biomedicine
    • High-performance Computing for Data-Centric Biomedical Applications
    • Grid-based Visualization of Biomedical Data
    • Integration of Grid-enabled Applications into Clinical Practice

    IMPORTANT DATES

    January 31, 2007 February 15, 2007

    Submission of (6-page, maximum) paper - Extended deadline

    March 15, 2007

    Notification of acceptance

    April 15, 2007

    Final camera-ready paper due

    April 15, 2007

    Pre-registration deadline


    You must pre-register to have your paper published in the proceedings.
    If you only plan to attend and are not submitting a paper, pre-registration is still strongly encouraged. This conference is space-limited, and registration may not be available on-site.

    Thursday, January 11, 2007

    Workflows over Grid-based Web services: General framework and a practical case in structural biology

    EMBRACE COURSE

    The EMBRACE course on " Workflows over Grid-based Web services: General framework and a practical case in structural biology" is aimed at people who are interested in knowing more about key emerging technologies in Bioinformatics, such as workflows, web services and massively distributed Grid computing, with a combination of theory and practical hands-on implementation sessions, and the addressing of a practical case in the field of Structural Biology.

    The course will run in parallel during the first four days with a course organized by the NoE on Three-dimensional Electron Microscopy (3DEM). During the fifth day, Friday, attendees of both courses will join, together with representatives of the EGEE Grid Project, for a live, hands-on session demonstrating actual practical use of the Grid to solve an experimental 3DEM case. It is expected that through this unique practical experience we will all learn more about the possibilities and limitations of today's computational Grid technology and its impact on end users.

    Madrid acoge la Conferencia española de e-ciencia en computación Grid

    Región Digital

    Este método de computación Grid va a suponer una nueva revolución en el mundo de las Tecnologías de la Información y de las Comunicaciones, así como un paso más en la igualdad de recursos tecnológicos.

    El Centro de Investigaciones Energéticas, Medioambientales y Tecnológicas (CIEMAT) y el Centro Extremeño de Tecnologías Avanzadas (CETA-CIEMAT) organizan los próximos días 1 y 2 de marzo en Madrid la Conferencia Española de e-Ciencia en Computación Grid.

    Según ha informado la Universidad de Extremadura (UEx), esta tecnología permite conectar, a través de redes de comunicación, Internet y recursos informáticos distribuidos en un país o en todo el mundo; y compartir principalmente procesadores, memoria y disco, formando así un superordenador de coste razonable donde poder ejecutar aplicaciones científicas, industriales y sociales en muy poco tiempo y utilizar conjuntamente grandes volúmenes de datos.

    Además, este método va a desempeñar un papel relevante en todas las áreas científicas, industriales y sociales donde se necesite una gran capacidad de procesamiento y almacenamiento de datos, así como importantes avances en campos como la biomedicina, la física, la ingeniería, el cambio climático, entre otros.

    Por otro lado, la computación Grid permitirá a países con escasos recursos económicos aprovechar su potencial, sin necesidad de costosas inversiones en hardware.

    De este modo, el desarrollo de la e-Ciencia va a suponer un gran impacto científico, tecnológico y social, lo que redundará en la calidad de vida de los ciudadanos en los próximos años.

    Cabe señalar que CIEMAT y CETA organizan esta conferencia internacional con la finalidad de mostrar las más importantes redes de computación Grid actualmente activas en el mundo.